############################################################### # NAMD SOFTWARE PARAMETERS # ############################################################### # NAMD release (according to MolDynGrid runtime specification) NAMD_RUNTIME="NAMD-2.10" # Install NAMD in runtime instead or requesting pre-installed one BUILD_RUNTIME=yes # NAMD configuration file NAMD_CONFIG=ionized.namd # GPU Acceleration # Possible values are: # no - always use CPU only # if_any - use GPU if any available (default) # force - compute only if GPU present, fail otherwise NAMD_GPU=if_any # Custom job name (redefine moldynsub autogenerated one) #JOBNAME=my_namd_job ############################################################### # GENERAL GRID JOB REQUIREMENTS # ############################################################### # For single-node invocation just define number of CPUS (default is 1). CPUS=24 # For multi-node computing define number of nodes and processors per node to use. # Default is single-node way #NODES=2 #PPN=12 # Walltime (in minutes). Cluster queue defaults will be used if not specified. WALLTIME="6000" # Required disk space (in MB). Cluster queue defaults will be used if not specified. DISK="10240" # Required job memory per processor (in MB). Cluster queue defaults will be used if not specified. MEMORY="512" # Send notification e-mails to specified address #MAILTO="test@moldyngrid.org" # Notification parameters (affected only with MAILTO). If not specified and MAILTO is used - only FINISHED state notification used by default. # b - begin (PREPARING) # q - queued (INLRMS) # f - finalizing (FINISHING) # e - end (FINISHED) # c - cancellation (CANCELLED) # d - deleted (DELETED) #NOTIFY="bqfecd" ############################################################### # NORDUGRID ARC SUBMISSION OPTIONS # ############################################################### # Submit to EMI-ES interface of the cluster USE_EMIES=1 # Use EMI Registry service for resource discovery #USE_EMIR="https://emir.grid.org.ua:9126/services" # Use old EGIIS for resource discovery (WARNING! does not work with EMIES) #USE_EGIIS="ldap://giis.grid.org.ua:2135/Mds-Vo-name=Ukraine,o=grid" # Use specific cluster for job execution # If selected overrides EMIR/EGIIS method CLUSTER="arc.imbg.org.ua" #CLUSTER="arc.univ.kiev.ua" #CLUSTER="nordu.hpcc.ntu-kpi.kiev.ua" #CLUSTER="uagrid.org.ua" #CLUSTER="grid.isma.kharkov.ua" #CLUSTER="golowood.mao.kiev.ua" #CLUSTER="grid.icbge.org.ua" # Specify grid job submit debug level: FATAL, ERROR(default), WARNING, INFO, VERBOSE or DEBUG #SUBMITDEBUGLEVEL="ERROR"